People live in poorly maintained warehouses in the Bay Area because…

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http://www.nber.org/papers/w10124.pdf
People live in poorly maintained warehouses in the Bay Area because they're one of the few remaining sources of affordable housing.

And I would argue that the root cause of high housing costs is a regulatory/political regime that has resulted in the housing supply severely lagging the demand.

And that regulatory regime is caused by:

* "smart growth" regulations

* rent control regulations

* building code/zoning regulations driven by rent-seeking from the hotel/construction industry

* existing property owners not wanting to see their multi-million dollar investment driven down in value by a drastically increased supply of housing

The combined effect of the above regulations drives the cost of housing to 30-50% more than it would otherwise be:

"[O]ur estimate of the Regulatory Tax as a percentage of average house value...amounts to from one-third to one half of home value...[in Los Angeles, Oakland, San Francisco, and San Jose metropolitan areas]. In Boston, Newport News, and Washington, DC, the gap constitutes about one-fifth of total property value.

Thus, the evidence for single-family housing markets across a diverse set of metropolitan areas recently tracked by the American Housing Survey suggests a big role for regulatory restrictions in accounting for high house prices in a select set of primarily coastal markets."

http://www.nber.org/papers/w10124.pdf